multiview-reconstruction/data/dataset_corrected_viewer_s3.xml at 76b6ddc1443745e5ef40af0e0cee4b96d072c3fb · JaneliaSciComp/multiview-reconstruction · GitHub

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<?xml version="1.0" encoding="UTF-8"?>
<SpimData version="0.2">
  <BasePath type="relative">.</BasePath>
  <SequenceDescription>
    <ImageLoader format="spimreconstruction.wrapped.flatfield.viewer" Active="true" Cached="true">
      <WrappedImgLoader>
        <ImageLoader format="bdv.n5" version="1.1">
          <n5 type="relative">https://s3.janelia.org/keller-lab/s12a/samples_for_stitching/fly_brain_3/basic_corrected/dataset.n5</n5>
        </ImageLoader>
      </WrappedImgLoader>
      <FlatFields>
        <FlatField Timepoint="0" ViewSetup="0">
		  <BrightImg format="n5">https://s3.janelia.org/keller-lab/s12a/samples_for_stitching/fly_brain_3/kittisopikulm/camera1/dark_field/s0/</BrightImg>
		  <DarkImg format="n5" >https://s3.janelia.org/keller-lab/s12a/samples_for_stitching/fly_brain_3/kittisopikulm/camera1/flat_field/s0/</DarkImg>
        </FlatField>
      </FlatFields>
    </ImageLoader>
    <ViewSetups>
      <ViewSetup>
        <id>0</id>
        <name>0</name>
        <size>512 320 825</size>
        <voxelSize>
          <unit>pixels</unit>
          <size>1.0 1.0 3.0</size>
        </voxelSize>
        <attributes>
          <illumination>0</illumination>
          <channel>0</channel>
          <tile>187</tile>
          <angle>0</angle>
        </attributes>
      </ViewSetup>
      <Attributes name="illumination">
        <Illumination>
          <id>0</id>
          <name>0</name>
        </Illumination>
      </Attributes>
      <Attributes name="channel">
        <Channel>
          <id>0</id>
          <name>0</name>
        </Channel>
      </Attributes>
      <Attributes name="tile">
        <Tile>
          <id>187</id>
          <name>187</name>
        </Tile>
        <Tile>
          <id>188</id>
          <name>188</name>
        </Tile>
        <Tile>
          <id>189</id>
          <name>189</name>
        </Tile>
        <Tile>
          <id>200</id>
          <name>200</name>
        </Tile>
        <Tile>
          <id>201</id>
          <name>201</name>
        </Tile>
        <Tile>
          <id>202</id>
          <name>202</name>
        </Tile>
        <Tile>
          <id>213</id>
          <name>213</name>
        </Tile>
        <Tile>
          <id>214</id>
          <name>214</name>
        </Tile>
        <Tile>
          <id>215</id>
          <name>215</name>
        </Tile>
      </Attributes>
      <Attributes name="angle">
        <Angle>
          <id>0</id>
          <name>0</name>
        </Angle>
      </Attributes>
    </ViewSetups>
    <Timepoints type="pattern">
      <integerpattern>0</integerpattern>
    </Timepoints>
    <MissingViews />
  </SequenceDescription>
  <ViewRegistrations>
    <ViewRegistration timepoint="0" setup="0">
      <ViewTransform type="affine">
        <Name>AffineModel3D regularized with an RigidModel3D, lambda = 0.1</Name>
        <affine>1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0</affine>
      </ViewTransform>
      <ViewTransform type="affine">
        <Name>Stitching Transform</Name>
        <affine>1.0 0.0 0.0 0.4554158176323426 0.0 1.0 0.0 -0.13328548693164066 0.0 0.0 1.0 1.039028825990859</affine>
      </ViewTransform>
      <ViewTransform type="affine">
        <Name>Translation to Regular Grid</Name>
        <affine>1.0 0.0 0.0 199.68 0.0 1.0 0.0 102.40000000000003 0.0 0.0 1.0 -1236.0</affine>
      </ViewTransform>
      <ViewTransform type="affine">
        <Name>calibration</Name>
        <affine>1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 3.0 0.0</affine>
      </ViewTransform>
    </ViewRegistration>
  </ViewRegistrations>
  <ViewInterestPoints />
  <BoundingBoxes />
  <PointSpreadFunctions />
  <StitchingResults />
  <IntensityAdjustments />
</SpimData>