Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
Uh oh!
There was an error while loading.
Please reload this page
.
EBI-Metagenomics
/
emg-viral-pipeline
Public
Notifications
You must be signed in to change notification settings
Fork
21
Star
153
Code
Issues
18
Pull requests
1
Actions
Security and quality
0
Insights
Additional navigation options
Code
Issues
Pull requests
Actions
Security and quality
Insights
Actions: EBI-Metagenomics/emg-viral-pipeline
Actions
All workflows
Workflows
.github/workflows/nf-test-e2e.yml
.github/workflows/nf-test-e2e.yml
Copilot code review
Copilot code review
Dependabot Updates
Dependabot Updates
Dependency Graph
Dependency Graph
Full end-to-end pipeline test
Full end-to-end pipeline test
Linting
Linting
Python unit tests
Python unit tests
Show more workflows...
Management
Caches
All workflows
All workflows
Actions
Loading...
Loading
Sorry, something went wrong.
Uh oh!
There was an error while loading.
Please reload this page
.
will be ignored since log searching is not yet available
Showing runs from all workflows
will be ignored since log searching is not yet available
160 workflow runs
160 workflow runs
Workflow
Filter by Workflow
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching workflows.
Event
Filter by Event
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching events.
Status
Filter by Status
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching statuses.
Branch
Filter by Branch
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching branches.
Actor
Filter by Actor
Sorry, something went wrong.
Filter
Loading
Sorry, something went wrong.
No matching users.
Performance improvements of SPLIT_PROTEINS module
Python unit tests
#281:
Pull request
#171
synchronize by
ochkalova
27s
feature/performance_improvements
feature/performance_improvements
27s
View #171
View workflow file
Performance improvements of SPLIT_PROTEINS module
Python unit tests
#280:
Pull request
#171
opened by
ochkalova
30s
feature/performance_improvements
feature/performance_improvements
30s
View #171
View workflow file
Bump pytest from 9.0.1 to 9.0.3
Python unit tests
#279:
Pull request
#170
opened by
dependabot
Bot
28s
dependabot/pip/pytest-9.0.3
dependabot/pip/pytest-9.0.3
28s
View #170
View workflow file
pip in /. for pytest - Update #1321950231
Dependabot Updates
#1:
by
dependabot
Bot
56s
master
master
56s
nf-schema wasn't installed
Python unit tests
#278:
Pull request
#169
synchronize by
mberacochea
26s
bugfix/nf-schema-not-included
bugfix/nf-schema-not-included
26s
View #169
View workflow file
nf-schema wasn't installed (#169)
Python unit tests
#277:
Commit
2ec5159
pushed by
mberacochea
24s
master
master
24s
View workflow file
nf-schema wasn't installed
Python unit tests
#276:
Pull request
#169
synchronize by
mberacochea
28s
bugfix/nf-schema-not-included
bugfix/nf-schema-not-included
28s
View #169
View workflow file
nf-schema wasn't installed
Python unit tests
#275:
Pull request
#169
opened by
mberacochea
28s
bugfix/nf-schema-not-included
bugfix/nf-schema-not-included
28s
View #169
View workflow file
Bump version 3.2.0 -> 3.3.0
Python unit tests
#274:
Commit
b41a064
pushed by
mberacochea
25s
master
master
25s
View workflow file
Merge pull request #168 from EBI-Metagenomics/feature/user-proteins-f…
Python unit tests
#273:
Commit
acd86ff
pushed by
mberacochea
31s
master
master
31s
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#272:
Pull request
#168
synchronize by
mberacochea
30s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
30s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#271:
Pull request
#168
synchronize by
mberacochea
35s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
35s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#270:
Pull request
#168
synchronize by
mberacochea
28s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
28s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#269:
Pull request
#168
synchronize by
mberacochea
33s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
33s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#268:
Pull request
#168
synchronize by
mberacochea
40s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
40s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#267:
Pull request
#168
synchronize by
mberacochea
29s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
29s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#266:
Pull request
#168
synchronize by
mberacochea
34s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
34s
View #168
View workflow file
Feature/user proteins filter out proteins not in contigs
Python unit tests
#265:
Pull request
#168
opened by
mberacochea
35s
feature/user-proteins-filter-out-proteins-not-in-contigs
feature/user-proteins-filter-out-proteins-not-in-contigs
35s
View #168
View workflow file
Merge pull request #167 from EBI-Metagenomics/bugfix/write-gff-missin…
Python unit tests
#264:
Commit
1fdebad
pushed by
mberacochea
32s
master
master
32s
View workflow file
Bugfix/write gff missing contigs when user provided proteins
Python unit tests
#263:
Pull request
#167
synchronize by
mberacochea
30s
bugfix/write-gff-missing-contigs-when-user-provided-proteins
bugfix/write-gff-missing-contigs-when-user-provided-proteins
30s
View #167
View workflow file
Bugfix/write gff missing contigs when user provided proteins
Python unit tests
#262:
Pull request
#167
synchronize by
mberacochea
29s
bugfix/write-gff-missing-contigs-when-user-provided-proteins
bugfix/write-gff-missing-contigs-when-user-provided-proteins
29s
View #167
View workflow file
Merge pull request #166 from EBI-Metagenomics/bugfix/annotate-fails-w…
Python unit tests
#261:
Commit
7584428
pushed by
mberacochea
30s
master
master
30s
View workflow file
Copilot code review
Copilot code review
#1:
by
Copilot
AI
7m 27s
refs/pull/166/head
refs/pull/166/head
7m 27s
Bugfix/write gff missing contigs when user provided proteins
Python unit tests
#260:
Pull request
#167
opened by
mberacochea
28s
bugfix/write-gff-missing-contigs-when-user-provided-proteins
bugfix/write-gff-missing-contigs-when-user-provided-proteins
28s
View #167
View workflow file
Do not consider fraggenescan proteins in the annotation module
Python unit tests
#259:
Pull request
#166
opened by
mberacochea
31s
bugfix/annotate-fails-with-non-prodigal-headers
bugfix/annotate-fails-with-non-prodigal-headers
31s
View #166
View workflow file
Previous
1
2
3
4
5
6
7
Next
You can’t perform that action at this time.