add mag test dataset #11

	name: nf-test for subworkflows

	on:
	push:
	branches: ["master", "fix/github-actions"]
	pull_request:
	branches: ["master"]

	jobs:
	subwf-test:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Set up JDK 17
	uses: actions/setup-java@v2
	with:
	java-version: '17'
	distribution: 'adopt'

	- name: Setup Nextflow latest-edge
	uses: nf-core/setup-nextflow@v1
	with:
	version: "25.10.0"

	- name: Setup nf-test
	uses: nf-core/setup-nf-test@v1.3.6
	with:
	install-pdiff: true

	- name: Free disk space
	run: \|
	echo "Disk before cleanup:"
	df -h

	docker system prune -af \|\| true
	docker volume prune -f \|\| true

	sudo rm -rf /usr/share/dotnet \|\| true
	sudo rm -rf /opt/ghc \|\| true
	sudo rm -rf /usr/local/lib/android \|\| true
	sudo rm -rf /opt/hostedtoolcache/CodeQL \|\| true

	echo "Disk after cleanup:"
	df -h

	- name: Run Tests
	run: nf-test test --verbose --tag subworkflows --profile docker,local

	- name: Move .nf-test output to non-hidden folder for artifact upload
	if: always()
	run: \|
	echo "changing name of .nf-test dir"
	mv .nf-test nf-test-output

	- name: Store the nf-test results if nf-test failed
	if: failure()
	uses: actions/upload-artifact@v4
	with:
	name: nf-test-out
	include-hidden-files: true
	path: \|
	${{ github.workspace }}/nf-test-output

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