mtDNA variant local freq not visible bug or known prob?

[4WGH]

[northwestwitch]

Are frequencies present on the variant page?

[northwestwitch]

Are frequencies present on the variant page?

Archived local observations are supposed to be displayed, not local observations (the table above)

[4WGH]

[cid:d55c0dc3-b587-4795-a7b0-b9107e1da99d] no but should it look like this? N/A for total nr in "local observation?"

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[northwestwitch]

no but should it look like this? N/A for total nr in "local observation?"

Is it a build 38 case?

[4WGH]

YES

[northwestwitch]

YES

Then I believe it is expected. I checked the 2 local files we have with archived observations for the build 38 variants and neither contains data for the MT chromosome. I asked the pipeline developers if we plan to include this data in the upcoming archives. I'll answer as soon as I have a reply from them!

[northwestwitch]

Pin @ramprasadn @jemten