.gitignore

# macOS / editor
.DS_Store
.AppleDouble
.LSOverride
.idea/
.vscode/
*.swp
*.swo
*~

# Python caches
__pycache__/
*.py[cod]
*$py.class
.pytest_cache/
.mypy_cache/
.ruff_cache/
.coverage
coverage.xml
htmlcov/

# Virtual environments
.venv/
venv/
env/
ENV/
.env
.env.*
node_modules/
.netlify/

# Build / packaging
build/
dist/
*.egg-info/
*.egg
pip-wheel-metadata/

# PaperPilot run artifacts
runs/
pdfs/
fulltext/
*.log
events.jsonl
download_log.json
paper_notes.json
report.canonical.json
report.zh.md
report.en.md
report.zh.html
report.en.html
report.zh.pdf
report.en.pdf
metadata.json
corpus.json
core_papers.json
adjacent_papers.json
excluded_papers.json
ranked_papers.json
verification.json
quality_gate.json
reflection.json
evidence_ledger.json
review_agent_findings.json
literature_matrix.json
synthesis.json
state.json
task.json
manifest.json
prompt_manifest.json
registries.json
user_corpus_log.json
query_understanding.md
plan.json
protocol.json

# Secrets and local LLM config
api.json
llmapi.txt
llmapi.json
openai_api_key*
deepseek_api_key*
*.key
*.pem
*.p12
*.pfx

# Local notebooks / data dumps
.ipynb_checkpoints/
*.sqlite
*.sqlite3
*.db
*.csv
*.tsv
*.xlsx
*.parquet

# Twine / publishing local state
.pypirc
publish_pypi.sh
!scripts/publish_pypi.sh

# Local design/source notes not published to GitHub
paperpilot_agent_flow.excalidraw
paperpilot_github_home_flow.excalidraw
使用文档.md
来源.txt