| bofire |
P0 |
adopted_optional |
bofire |
bofire_adapter_planning |
non_box_constraints, multi_objective_responses, scale_fidelity_structure, ... |
| frictionless |
P0 |
adopted_optional |
contracts |
contract_validation |
table_contracts |
| nox |
P0 |
adopted_optional |
dev |
execution_lane |
local_validation, optional_lanes |
| pubmed_mcp_adapter |
P0 |
adopted_optional |
|
live_citation_enrichment |
dossier_citation_enrichment, bibtex_export |
| ro_crate |
P0 |
adopted_optional |
|
provenance_metadata |
compile_dossier, workflow_run_provenance, profile_validation_candidate |
| salib |
P0 |
adopted_optional |
sensitivity |
sensitivity_screening |
sensitivity_screening, assumption_attack, scale_recipe_uncertainty |
| ax |
P1 |
evaluate_next |
backend-eval |
not_yet_evaluated |
adaptive_orchestration_pilot, custom_generation_strategy, botorch_infrastructure |
| baybe |
P1 |
evaluate_next |
backend-eval |
not_yet_evaluated |
bofire_alternative_adapter, categorical_substance_encoding, transfer_learning_across_campaigns, ... |
| biosteam |
P1 |
evaluate_next |
|
economic_context_sidecar |
cost_rollup_sidecar, downstream_context |
| botorch |
P1 |
adopted_optional |
botorch |
experimental_adapter |
experimental_adaptive_adapter |
| cwl |
P1 |
watch |
|
workflow_provenance_sidecar |
provider_handoff_bundle |
| eln_file_format |
P1 |
evaluate_next |
|
interchange_candidate |
eln_export_candidate, run_packet_interchange, ro_crate_profile_reference |
| entmoot |
P1 |
adopted_optional |
entmoot |
adapter_backed_nchoosek_bo |
nchoosek_cardinality_bo, tree_based_surrogate, in_repo_adapter |
| fedbatchdesigner |
P1 |
evaluate_next |
|
reference_sidecar |
fed_batch_reference_example |
| grobid_fulltext |
P1 |
evaluate_next |
|
evidence_extraction_sidecar |
public_pdf_structuring, dossier_evidence_harvest, citation_context_extraction |
| omlt |
P1 |
adopted_optional |
omlt |
omlt_adapter_planning |
mip_surrogate_optimization, nchoosek_cardinality_bo, optional_in_repo_adapter |
| petab_libpetab |
P1 |
evaluate_next |
|
calibration_contract_candidate |
mechanistic_model_contract, parameter_estimation_fixture, petab_validation |
| pixi |
P1 |
watch |
|
developer_tooling |
dependency_locking |
| pseudobatch |
P1 |
evaluate_next |
|
preprocessing_candidate |
fed_batch_sample_withdrawal, ledger_preprocessing, growth_rate_transform_reference |
| pydoe |
P1 |
watch |
|
adapter_backed_classical_doe |
screening, rsm_fit, space_filling_scout |
| pydoe3 |
P1 |
compatibility_only |
pydoe3 |
compatibility_adapter |
extended_box_behnken, latin_hypercube_maximin, legacy_pydoe3_adapter |
| pyomo_dae |
P1 |
evaluate_next |
|
deterministic_feasibility_sidecar |
fed_batch_feasibility, dynamic_constraints |
| pypesto |
P1 |
evaluate_next |
|
calibration_sidecar_candidate |
mechanistic_parameter_estimation, uncertainty_quantification_sidecar, petab_sbml_pipeline |
| pyplate |
P1 |
evaluate_next |
|
execution_recipe_sidecar |
plate_arm_manifest, plate_recipe_export |
| sbml_runtime_stack |
P1 |
evaluate_next |
|
simulation_sidecar |
mechanistic_model_sidecar |
| xopt |
P1 |
evaluate_next |
|
not_yet_evaluated |
adaptive_backend_comparison, constrained_bo, multi_objective_bo, ... |
| atlas |
P2 |
watch |
|
not_yet_evaluated |
categorical_aware_bo |
| bletl |
P2 |
boundary_only |
|
external_reference |
external_biolector_ingest |
| botorch_direct |
P2 |
watch |
|
not_yet_evaluated |
cost_aware_acquisition, direct_surrogate_control |
| cadet |
P2 |
boundary_only |
|
external_reference |
downstream_external_sidecar |
| cobrapy |
P2 |
boundary_only |
|
evidence_sidecar |
metabolic_evidence_sidecar |
| dwsim |
P2 |
boundary_only |
|
external_reference |
external_flowsheet_export |
| estim8 |
P2 |
boundary_only |
|
external_reference |
fmi_modelica_parameter_estimation, external_bioprocess_model_ingest |
| europe_pmc_api |
P2 |
watch |
|
metadata_harvest_watch |
public_life_science_search, open_fulltext_lookup, annotation_harvest |
| llambo |
P2 |
watch |
|
not_yet_evaluated |
llm_warmstart_first_batch, optuna_sampler_pilot |
| nextflow |
P2 |
watch |
|
workflow_sidecar |
large_compute_pipeline |
| obsidian_apo |
P2 |
boundary_only |
|
external_reference |
dash_ui_reference, shap_explanation_reference |
| openalex_official |
P2 |
watch |
|
metadata_harvest_watch |
public_literature_context, citation_graph_harvest |
| processoptimizer |
P2 |
watch |
|
not_yet_evaluated |
scikit_optimize_migration_target |
| pymoo |
P2 |
evaluate_next |
|
candidate_table_diagnostic |
pareto_report, design_tournament |
| smt |
P2 |
evaluate_next |
|
surrogate_diagnostic |
scale_bridge_diagnostic |
| snakemake |
P2 |
watch |
|
workflow_sidecar |
batch_benchmark_dag |
| tabicl_v2 |
P2 |
watch |
|
watch_only |
foundation_model_surrogate_watch, tabpfn_comparison, larger_table_regression_watch |
| tabpfn_v2 |
P2 |
adopted_optional |
tabpfn |
tabpfn_adapter_planning |
foundation_model_surrogate_pilot, small_data_tabular_regression, optional_in_repo_adapter |
| trieste |
P2 |
watch |
|
watch_only |
complex_acquisition_reference, ask_tell_bo_watch, multi_fidelity_bo_watch |
| pysamoo |
Avoid |
avoid |
|
not_applicable |
|
| scikit_optimize |
Avoid |
avoid |
|
not_applicable |
|