RSimpleITK/.github/workflows/release.yml at a1ad5c0fe68cca3056c200e81d7d2f7365f8c5bf · BIMSBbioinfo/RSimpleITK · GitHub

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on:
  push:

name: R-release

jobs:

  metadata:
    name: Read package metadata
    runs-on: ubuntu-latest
    outputs:
      version: ${{ steps.meta.outputs.version }}

    steps:
      - uses: actions/checkout@v4

      - name: Setup R
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: '4.5.2'

      - name: Extract version from DESCRIPTION
        id: meta
        run: |
          VERSION="$(Rscript -e 'x <- read.dcf("DESCRIPTION"); cat(x[1,"Version"])')"
          echo "version=$VERSION" >> "$GITHUB_OUTPUT"
          echo "Detected version: $VERSION"

      - name: Publish release
        uses: softprops/action-gh-release@v2
        with:
          tag_name: ${{ steps.meta.outputs.version }}
          name: ${{ steps.meta.outputs.version }}
          draft: true

  build:
    name: Build R package on ${{ matrix.config.os }}
    runs-on: ${{ matrix.config.os }}
    needs: metadata

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      _R_CHECK_TESTS_NLINES_: 0
      NOT_CRAN: true
      HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK: true
      _R_CHECK_FORCE_SUGGESTS_: false
      GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_LIBS: ${{ github.workspace }}/Rlibs

    strategy:
      fail-fast: false
      matrix:
        config:
          # - {os: macos-15-intel, r: 'release', build: 'binary'}
          - {os: windows-latest, r: 'release', build: 'binary'}
          - {os: ubuntu-latest, r: 'release', build: 'source'}

    steps:

      - name: Checkout Repository
        uses: actions/checkout@v4

      - name: Setup pandoc
        uses: r-lib/actions/setup-pandoc@v2

      - name: Setup R
        uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}

      - name: Configuration Information
        if: runner.os == 'Linux' || runner.os == 'macOS'
        run: |
          mkdir ${R_LIBS}
          c++ --version
          cmake --version
          which R
          R --version

      - name: Install R packages
        if: runner.os == 'Linux' || runner.os == 'macOS'
        run: |
          R -e "install.packages(c('remotes', 'desc'), lib=c('${R_LIBS}'), repo='https://cloud.r-project.org/')"

      - name: Make source (Linux)
        if: runner.os == 'Linux'
        run: |
          set -x
          R CMD build . --no-manual
        env:
          ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS: 2

      - name: Build Package (macOS)
        if: runner.os == 'macOS'
        run: |
          set -x
          R CMD INSTALL --build -l ${R_LIBS} --configure-vars='MAKEJ=8' .
        env:
          ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS: 2

      - name: Configuration Information (Windows)
        if: startsWith(matrix.config.os, 'windows')
        shell: pwsh
        run: |
          New-Item -ItemType Directory -Force -Path "$env:R_LIBS" | Out-Null
          g++ --version
          cmake --version
          Get-Command R.exe
          R.exe --version

      - name: Install R packages (Windows)
        if: startsWith(matrix.config.os, 'windows')
        shell: pwsh
        run: |
          Rscript -e "lib <- Sys.getenv('R_LIBS'); lib <- normalizePath(lib, winslash='/', mustWork=FALSE); dir.create(lib, recursive=TRUE, showWarnings=FALSE); install.packages('remotes', lib=lib, repos='https://cloud.r-project.org/')"
          Rscript.exe -e "install.packages(c('remotes', 'desc'), repos='https://cloud.r-project.org/')"

      - name: Build Package (Windows)
        if: startsWith(matrix.config.os, 'windows')
        shell: pwsh
        env:
          ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS: 2
        run: |
          $env:MAKEJ="8"
          $env:ADDITIONAL_SITK_MODULES="-DSimpleITK_USE_ELASTIX=ON"
          Rcmd.exe INSTALL --build .

      - name: Collect artifacts
        shell: bash
        run: |
          mkdir -p dist
          mv *.zip *.tgz *.tar.gz dist/ 2>/dev/null || true

      - name: Upload artifacts
        uses: actions/upload-artifact@v4
        with:
          name: r-${{ matrix.config.os }}
          path: dist/*


  release:
    name: Create GitHub Release
    runs-on: ubuntu-22.04
    needs: [metadata, build]

    permissions:
      contents: write

    steps:

      - uses: actions/download-artifact@v4
        with:
          path: dist

      - name: Inspect release assets
        run: ls -R dist

      - name: Publish release
        uses: softprops/action-gh-release@v2
        with:
          tag_name: ${{ needs.metadata.outputs.version }}
          name: ${{ needs.metadata.outputs.version }}
          draft: true
          files: dist/**/*